Index

A

agent_path (focal.config_schema.TrainRLConfig attribute) angle_threshold (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TestMLPConfig attribute) (focal.config_schema.TestXGBoostConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) (focal.config_schema.TrainXGBoostConfig attribute)

B

backbone (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.GradCamConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) BadCleaveTensionClassifier (class in focal.data_processing) BaseCommand (class in focal.commands.base_command) BaseConfig (class in focal.config_schema) batch_size (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainRLConfig attribute) best_tuner_params (focal.config_schema.TrainImageOnlyConfig attribute) brightness (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute)

buffer_size (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainRLConfig attribute) build() (focal.BuildHyperModel method) (focal.BuildMLPHyperModel method) (focal.hyperparameter_tuning.BuildHyperModel method) (focal.hyperparameter_tuning.BuildMLPHyperModel method) (focal.hyperparameter_tuning.ImageOnlyHyperModel method) (focal.ImageOnlyHyperModel method) BuildHyperModel (class in focal) (class in focal.hyperparameter_tuning) BuildMLPHyperModel (class in focal) (class in focal.hyperparameter_tuning) BuildMLPModel (class in focal) (class in focal.mlp_model)

C

checkpoint_filepath (focal.config_schema.CheckpointMixin attribute) CheckpointMixin (class in focal.config_schema) checkpoints (focal.config_schema.CheckpointMixin attribute) class_index (focal.config_schema.GradCamConfig attribute) classification_path (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) classification_threshold (focal.config_schema.TestCNNConfig attribute) classification_type (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) CleaveEnv (class in focal.rl_pipeline) cnn_mode (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TrainCNNConfig attribute) cnn_path (focal.config_schema.TrainRLConfig attribute) CNNHyperparameterConfig (class in focal.config_schema) CNNHyperparameterSearch (class in focal.commands.hyperparameter_commands) compile_custom_model() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) compile_image_only_model() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) compile_model() (focal.BuildMLPModel method) (focal.CustomModel method) (focal.mlp_model.BuildMLPModel method) (focal.model_pipeline.CustomModel method) compute_all_heatmaps() (focal.grad_cam.GradCAM method) (focal.GradCAM method) compute_heatmap() (focal.grad_cam.GradCAM method) (focal.GradCAM method)

continue_train (focal.config_schema.ModelConfig attribute) contrast (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) conv_layer_name (focal.config_schema.GradCamConfig attribute) create_checkpoints() (focal.BuildMLPModel method) (focal.CustomModel method) (focal.mlp_model.BuildMLPModel method) (focal.model_pipeline.CustomModel method) create_custom_dataset() (focal.data_processing.DataCollector method) (focal.DataCollector method) create_datasets() (focal.data_processing.DataCollector method) (focal.data_processing.MLPDataCollector method) (focal.DataCollector method) (focal.MLPDataCollector method) create_early_stopping() (focal.BuildMLPModel method) (focal.CustomModel method) (focal.mlp_model.BuildMLPModel method) (focal.model_pipeline.CustomModel method) create_kfold_datasets() (focal.data_processing.DataCollector method) (focal.data_processing.MLPDataCollector method) (focal.DataCollector method) (focal.MLPDataCollector method) create_tensorboard_callback() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) csv_path (focal.config_schema.BaseConfig attribute) (focal.config_schema.TrainRLConfig attribute) CustomModel (class in focal) (class in focal.model_pipeline)

D

DataCollector (class in focal) (class in focal.data_processing) dense1 (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) dense2 (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainMLPConfig attribute) df (focal.data_processing.DataCollector property) (focal.DataCollector property) diameter_threshold (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TestMLPConfig attribute) (focal.config_schema.TestXGBoostConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) (focal.config_schema.TrainXGBoostConfig attribute)

display_classification_report() (focal.prediction_testing.TestPredictions method) (focal.TestPredictions method) display_confusion_matrix() (focal.prediction_testing.TestPredictions method) (focal.TestPredictions method) dropout1 (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) dropout2 (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) dropout3 (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainMLPConfig attribute)

E

early_stopping (focal.config_schema.EarlyStoppingMixin attribute) EarlyStoppingMixin (class in focal.config_schema) encoder_path (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) episodes (focal.config_schema.TestRLConfig attribute) error_type (focal.config_schema.TrainXGBoostConfig attribute)

execute() (focal.commands.base_command.BaseCommand method) (focal.commands.hyperparameter_commands.ImageHyperparameterSearch method) extract_data() (focal.data_processing.BadCleaveTensionClassifier method) (focal.data_processing.DataCollector method) (focal.data_processing.MLPDataCollector method) (focal.DataCollector method) (focal.MLPDataCollector method)

F

feature_scaler_path (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) feature_shape (focal.config_schema.BaseConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainRLConfig attribute) fig_size (focal.config_schema.GradCamConfig attribute) focal module focal.commands module focal.commands.base_command module focal.commands.grad_cam_commands module focal.commands.hyperparameter_commands module focal.commands.test_commands module focal.commands.train_commands module focal.commands.utils module focal.config_schema module

focal.constants module focal.data_processing module focal.grad_cam module focal.hyperparameter_tuning module focal.main module focal.mlflow_utils module focal.mlp_model module focal.model_pipeline module focal.prediction_testing module focal.rl_pipeline module focal.xgboost_pipeline module

G

gamma (focal.config_schema.TrainXGBoostConfig attribute) gather_predictions() (focal.prediction_testing.TestPredictions method) (focal.prediction_testing.TestTensionPredictions method) (focal.TestPredictions method) get_averages_from_kfold() (focal.BuildMLPModel static method) (focal.CustomModel static method) (focal.mlp_model.BuildMLPModel static method) (focal.model_pipeline.CustomModel static method) get_backbone_preprocessor() (focal.data_processing.DataCollector method) (focal.DataCollector method) get_best_hyperparameters() (focal.hyperparameter_tuning.HyperParameterTuning method) (focal.HyperParameterTuning method)

get_best_model() (focal.hyperparameter_tuning.HyperParameterTuning method) (focal.HyperParameterTuning method) get_data_augmentation() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) get_model() (focal.xgboost_pipeline.XGBoostModel method) (focal.XGBoostModel method) GradCAM (class in focal) (class in focal.grad_cam) GradCamConfig (class in focal.config_schema) GradCamDisplay (class in focal.commands.grad_cam_commands)

H

heatmap_file (focal.config_schema.GradCamConfig attribute) height (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute)

high_range (focal.config_schema.TrainRLConfig attribute) HyperParameterTuning (class in focal) (class in focal.hyperparameter_tuning)

I

image_only_dataset() (focal.data_processing.DataCollector method) (focal.DataCollector method) image_path (focal.config_schema.GradCamConfig attribute) image_shape (focal.config_schema.BaseConfig attribute) ImageHyperparameterConfig (class in focal.config_schema) ImageHyperparameterSearch (class in focal.commands.hyperparameter_commands) ImageHyperparameterTuning (class in focal) (class in focal.hyperparameter_tuning) ImageOnlyHyperModel (class in focal) (class in focal.hyperparameter_tuning)

img_folder (focal.config_schema.BaseConfig attribute) (focal.config_schema.GradCamConfig attribute) (focal.config_schema.TrainRLConfig attribute) img_path (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TestMLPConfig attribute) (focal.config_schema.TrainMLPConfig attribute) initial_epochs (focal.config_schema.ModelConfig attribute)

K

KFoldCNN (class in focal.commands.train_commands)

KFoldMLP (class in focal.commands.train_commands)

L

l2_factor (focal.config_schema.TrainImageOnlyConfig attribute) label_scaler_path (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestMLPConfig attribute) learning_rate (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainRLConfig attribute) load() (focal.xgboost_pipeline.XGBoostModel method) (focal.xgboost_pipeline.XGBoostPredictor method) (focal.XGBoostModel method) (focal.XGBoostPredictor method) load_and_preprocess_image() (focal.prediction_testing.TensionPredictor method) (focal.TensionPredictor method) load_config() (in module focal.config_schema)

load_process_images() (focal.data_processing.DataCollector method) (focal.DataCollector method) (focal.rl_pipeline.CleaveEnv method) log_classifier_test_results() (in module focal.mlflow_utils) log_cnn_hyperparameter() (in module focal.mlflow_utils) log_cnn_training_run() (in module focal.mlflow_utils) log_image_training_run() (in module focal.mlflow_utils) log_mlp_hyperparameter() (in module focal.mlflow_utils) log_mlp_training_run() (in module focal.mlflow_utils) log_regressor_test_results() (in module focal.mlflow_utils) log_rl_test() (in module focal.mlflow_utils) log_xgb_training_run() (in module focal.mlflow_utils) low_range (focal.config_schema.TrainRLConfig attribute)

M

main() (in module focal.main) max_delta (focal.config_schema.TrainRLConfig attribute) max_depth (focal.config_schema.TrainXGBoostConfig attribute) max_epochs (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) max_steps (focal.config_schema.TrainRLConfig attribute) max_tension_change (focal.config_schema.TrainRLConfig attribute) metadata (focal.rl_pipeline.CleaveEnv attribute) method (focal.config_schema.CheckpointMixin attribute) (focal.config_schema.EarlyStoppingMixin attribute) MLPDataCollector (class in focal) (class in focal.data_processing) MLPHyperparameterConfig (class in focal.config_schema) MLPHyperparameterSearch (class in focal.commands.hyperparameter_commands) MLPHyperparameterTuning (class in focal) (class in focal.hyperparameter_tuning) mode (focal.config_schema.BaseConfig attribute) (focal.config_schema.GradCamConfig attribute) (focal.config_schema.TrainRLConfig attribute) model_config (focal.config_schema.BaseConfig attribute) (focal.config_schema.CheckpointMixin attribute) (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.EarlyStoppingMixin attribute) (focal.config_schema.GradCamConfig attribute) (focal.config_schema.ImageHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TestMLPConfig attribute) (focal.config_schema.TestRLConfig attribute) (focal.config_schema.TestXGBoostConfig attribute) (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainKFoldCNNConfig attribute) (focal.config_schema.TrainKFoldMLPConfig attribute) (focal.config_schema.TrainMLPConfig attribute) (focal.config_schema.TrainRLConfig attribute) (focal.config_schema.TrainXGBoostConfig attribute)

model_path (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.GradCamConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestImageOnlyConfig attribute) (focal.config_schema.TestMLPConfig attribute) ModelConfig (class in focal.config_schema) module focal focal.commands focal.commands.base_command focal.commands.grad_cam_commands focal.commands.hyperparameter_commands focal.commands.test_commands focal.commands.train_commands focal.commands.utils focal.config_schema focal.constants focal.data_processing focal.grad_cam focal.hyperparameter_tuning focal.main focal.mlflow_utils focal.mlp_model focal.model_pipeline focal.prediction_testing focal.rl_pipeline focal.xgboost_pipeline monitor (focal.config_schema.CheckpointMixin attribute) (focal.config_schema.EarlyStoppingMixin attribute) multiple_images (focal.config_schema.GradCamConfig attribute)

N

n_estimators (focal.config_schema.TrainXGBoostConfig attribute) num_classes (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute)

O

objective (focal.config_schema.ModelConfig attribute)

P

path_exists() (focal.config_schema.BaseConfig class method) patience (focal.config_schema.EarlyStoppingMixin attribute) plot_heatmap() (focal.grad_cam.GradCAM method) (focal.GradCAM method) plot_metric() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) (focal.prediction_testing.TensionPredictor method) (focal.TensionPredictor method) plot_metrics() (focal.xgboost_pipeline.XGBoostModel method) (focal.XGBoostModel method)

plot_roc() (focal.prediction_testing.TestPredictions method) (focal.TestPredictions method) predict() (focal.prediction_testing.TensionPredictor method) (focal.TensionPredictor method) (focal.xgboost_pipeline.XGBoostPredictor method) (focal.XGBoostPredictor method) predict_tension() (focal.prediction_testing.TestTensionPredictions method) project_name (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute)

R

random_state (focal.config_schema.TrainXGBoostConfig attribute) reduce_lr (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) reduce_lr_patience (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) (focal.config_schema.TrainMLPConfig attribute) reduce_on_plateau() (focal.CustomModel method) (focal.model_pipeline.CustomModel method)

reg_lambda (focal.config_schema.TrainXGBoostConfig attribute) render() (focal.rl_pipeline.CleaveEnv method) reset() (focal.rl_pipeline.CleaveEnv method) rotation (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute) run_name (focal.config_schema.TestRLConfig attribute) run_search() (focal.hyperparameter_tuning.HyperParameterTuning method) (focal.HyperParameterTuning method)

S

save() (focal.xgboost_pipeline.XGBoostModel method) (focal.XGBoostModel method) save_agent() (focal.rl_pipeline.TrainAgent method) save_best_model() (focal.hyperparameter_tuning.HyperParameterTuning method) (focal.HyperParameterTuning method) save_history_file (focal.config_schema.ModelConfig attribute) save_model_file (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute)

save_path (focal.config_schema.GradCamConfig attribute) save_scaler_encoder() (focal.data_processing.DataCollector method) (focal.DataCollector method) set_mask (focal.config_schema.BaseConfig attribute) step() (focal.rl_pipeline.CleaveEnv method) subsample (focal.config_schema.TrainXGBoostConfig attribute)

T

tau (focal.config_schema.TrainRLConfig attribute) tension_model_path (focal.config_schema.TestCNNConfig attribute) tension_threshold (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TrainCNNConfig attribute) TensionPredictor (class in focal) (class in focal.prediction_testing) test_agent() (focal.rl_pipeline.TestAgent method) test_features (focal.config_schema.TestCNNConfig attribute) (focal.config_schema.TestMLPConfig attribute) test_p (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.TrainCNNConfig attribute) test_prediction() (focal.prediction_testing.TestPredictions method) (focal.TestPredictions method) test_size (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute) TestAgent (class in focal.rl_pipeline) TestCNN (class in focal.commands.test_commands) TestCNNConfig (class in focal.config_schema) TestImageOnly (class in focal.commands.test_commands) TestImageOnlyConfig (class in focal.config_schema) TestMLP (class in focal.commands.test_commands) TestMLPConfig (class in focal.config_schema) TestPredictions (class in focal) (class in focal.prediction_testing) TestRL (class in focal.commands.test_commands) TestRLConfig (class in focal.config_schema) TestTensionPredictions (class in focal.prediction_testing) TestXGBoost (class in focal.commands.test_commands) TestXGBoostConfig (class in focal.config_schema) threshold (focal.config_schema.TrainRLConfig attribute) timesteps (focal.config_schema.TrainRLConfig attribute)

title (focal.config_schema.GradCamConfig attribute) train() (focal.rl_pipeline.TrainAgent method) (focal.xgboost_pipeline.XGBoostModel method) (focal.XGBoostModel method) train_kfold() (focal.CustomModel static method) (focal.model_pipeline.CustomModel static method) train_kfold_mlp() (focal.BuildMLPModel static method) (focal.mlp_model.BuildMLPModel static method) train_model() (focal.CustomModel method) (focal.model_pipeline.CustomModel method) train_p (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.TrainCNNConfig attribute) TrainAgent (class in focal.rl_pipeline) TrainCNN (class in focal.commands.train_commands) TrainCNNConfig (class in focal.config_schema) TrainCustomModel (class in focal.commands.train_commands) TrainImageOnly (class in focal.commands.train_commands) TrainImageOnlyConfig (class in focal.config_schema) TrainKFoldCNNConfig (class in focal.config_schema) TrainKFoldMLPConfig (class in focal.config_schema) TrainMLP (class in focal.commands.train_commands) TrainMLPConfig (class in focal.config_schema) TrainRL (class in focal.commands.train_commands) TrainRLConfig (class in focal.config_schema) TrainXGBoost (class in focal.commands.train_commands) TrainXGBoostConfig (class in focal.config_schema) tuner (focal.hyperparameter_tuning.HyperParameterTuning attribute) (focal.hyperparameter_tuning.ImageHyperparameterTuning attribute) (focal.HyperParameterTuning attribute) (focal.ImageHyperparameterTuning attribute) tuner_directory (focal.config_schema.CNNHyperparameterConfig attribute) (focal.config_schema.MLPHyperparameterConfig attribute) (focal.config_schema.ModelConfig attribute)

U

unfreeze_from (focal.config_schema.TrainCNNConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute)

V

valid_modes() (focal.config_schema.BaseConfig class method) valid_shapes() (focal.config_schema.TestCNNConfig method) (focal.config_schema.TestMLPConfig method) (focal.config_schema.TrainCNNConfig method) (focal.config_schema.TrainImageOnlyConfig method) (focal.config_schema.TrainMLPConfig method)

W

width (focal.config_schema.ModelConfig attribute) (focal.config_schema.TrainImageOnlyConfig attribute)

X

xgb_path (focal.config_schema.TestXGBoostConfig attribute) (focal.config_schema.TrainXGBoostConfig attribute) XGBoostModel (class in focal) (class in focal.xgboost_pipeline)

XGBoostPredictor (class in focal) (class in focal.xgboost_pipeline)